PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G221900.1
Common NameB456_011G221900, LOC105775590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 255aa    MW: 27751 Da    PI: 8.8227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G221900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0585107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+++Fs++  L  H++ H
  Gorai.011G221900.1  85 FSCNFCKRVFSTSQALGGHQNAH 107
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.76E-782112No hitNo description
Gene3DG3DSA:3.30.160.602.1E-483111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-584109IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.53185112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVIILEDPSE VVSTKSADMA GSVPQQKPSS VVLDLKLSNH DDDGDDNGGA KLRRESKIEL  60
DLFTPRNPTN SSQHDGDHHD KSKVFSCNFC KRVFSTSQAL GGHQNAHKQE RALAKRRHQG  120
LMEVNPSRTF GTPNFPYYPF STFPSIPFQG SYNRSPLSVR YESMVRKPTH PWPSMPSSLS  180
QPYHVPHGWS SSRQALMSLI QPNLSFNNGG LGIPGASTSA TLGLGQANVA MNRVSEGSDN  240
QCKDGAGMDL SLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453548.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A0D2VQ880.0A0A0D2VQ88_G
STRINGGLYMA06G46860.21e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-19zinc-finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]